Contigs and singletons
WebAug 17, 2016 · Total assignments for viral groups, singletons, and metagenomic viral contigs are shown above each bar. b, Phylogenetic distribution of bacterial and archaeal hosts. For each phylum a pie chart... WebMay 22, 2024 · Assembled EST contigs database of C. reticulata was used to BLAST against the Citrus sinensis miRNA dataset to identify the miRNA having at least 80% identity. Both mature and precursor miRNA matches were checked out in the resultant clustered contigs and singletons to generate a consensus for the prediction of mature …
Contigs and singletons
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http://scorreia.com/research/singletons.pdf WebDownload scientific diagram Composition of white spruce consensus sequences (contigs and singletons) according to orientation of direction of the reads (3' or 5') and according to their ...
Web有很多reads通过片段重叠，能够组装成一个更大的片段，称为contig；. 多个contigs通过片段重叠，组成一个更长的scaffold；. 一个contig被组成出来之后，鉴定发现它是编码蛋白 … WebContigs The assembly was done by first clustering the ESTs into groups of similar sequences, using Paracel PCP. Then each cluster was separately assembled into contigs and singletons using CAP4. The contigs are named by their cluster number and their contig number within that cluster.
WebApproximately 74% of the 3.3 million high quality sequences were assembled into contigs with a total length of 71 Mb. The final unique set of contigs and singletons from the … WebOct 21, 2012 · All unique sequence (contigs and singletons) were compared to the sequences in the UniProt/Swiss-Prot using Blastx program for gene annotation. Hits with the E value of ≤1.0 were accepted. Gene …
WebJul 26, 2011 · Our reads were assembled into 93,627 contigs (38,256,084 bp) and 309,074 singletons (69,524,702 bp), with an overall total of 402,701 unigenes (107,780,786 bp) that were deposited in a newly developed database called SiESTa (Silene EST annotations) (Table 1). All reads may be accessed under the accession number ERP000371 in the …
WebNov 20, 2009 · The number of contigs and singletons is much higher compared to the ZM_BF assembly because the proportion of mate-pairs was much lower, the ESTs are from different cultivars, and the quality of some sets of ESTs may be low. There were 10,618 contigs containing only ESTs from the ZM_BF libraries, representing 10k potential … fhlmc lowest ficoWebimage showing the five body sites with available samples. All the metagenomic viral contigs identified in each body site can be accessed from the circles in the image. (c) Table … fhlmc manufactured home matrixWebMar 16, 2010 · A combination of reference-based and de novo assemblies yielded 63,657 contigs, with 239,793 reads remaining as singletons. Based on sequence similarity with known proteins, these sequences represent approximately 17,000 unique genes, many of which are well covered by contig sequences. department of motor vehicles in clearwaterWebIn the context of genome assemblies, a singleton is a non-assembled read, usually a contamination or bad quality read. In gene context, it refers to a non-duplicate gene. … department of motor vehicles in daly cityWebJun 1, 2024 · Reoviridae contigs/singletons found in 4 dogs were compared with reference sequence of Rotavirus A (NC_011503.2) and 3 of them covered between 10.5% and 23.4% of the VP4 gene and the other sample covered 23.6% of the VP7 gene. Furthermore, contigs/singletons matching to canine parvovirus, were found in 2 dog samples with … department of motor vehicles in chicagohttp://scorreia.com/research/singletons.pdf department of motor vehicles in columbiaWebAug 14, 2024 · The genes on the contigs that were a mixture of singletons and non-singletons tended to emerge from the same species or genus. Only 8,557 (0.8%) of all … department of motor vehicles in costa mesa